If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ), 'gf_id' => 'HOM05D000635', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000635' ), 'data_identifier' => 'HOM05D000635', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000635', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02860' => 'bna', 'A02p44160' => 'bna', 'A03p12800' => 'bna', 'A03p32600' => 'bna', 'A03p47600' => 'bna', 'A05p44710' => 'bna', 'A06p17860' => 'bna', 'A08p25880' => 'bna', 'A09p09290' => 'bna', 'A09p29900' => 'bna', 'A10p14910' => 'bna', 'A10p23760' => 'bna', 'Aa31LG11G14460' => 'aar', 'Aa31LG1G16050' => 'aar', 'Aa31LG3G13360' => 'aar', 'Aa31LG4G18370' => 'aar', 'Aa31LG5G12340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1390' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3716' => 'aag', 'Actinidia02697' => 'ach', 'Actinidia04021' => 'ach', 'Actinidia04917' => 'ach', 'Actinidia06073' => 'ach', 'Actinidia08215' => 'ach', 'Actinidia11985' => 'ach', 'Actinidia15648' => 'ach', 'Actinidia16430' => 'ach', 'Actinidia19858' => 'ach', 'Actinidia23571' => 'ach', 'Actinidia26215' => 'ach', 'Actinidia26216' => 'ach', 'Actinidia27485' => 'ach', 'Actinidia31180' => 'ach', 'Actinidia31181' => 'ach', 'Actinidia32836' => 'ach', 'Actinidia32837' => 'ach', 'Actinidia36024' => 'ach', 'Actinidia36434' => 'ach', 'Actinidia37655' => 'ach', 'Actinidia38637' => 'ach', 'Actinidia38638' => 'ach', 'Ah.02g125440' => 'amhyb', 'Ah.02g131340' => 'amhyb', 'Ah.03g140480' => 'amhyb', 'Ah.10g031290' => 'amhyb', 'AL3G10960' => 'aly', 'AL5G29930' => 'aly', 'AL6G25910' => 'aly', 'AL8G33490' => 'aly', 'AL8G43800' => 'aly', 'Aqoxy1G01840' => 'aox', 'Aqoxy3G00202' => 'aox', 'Aqoxy3G00763' => 'aox', 'Aqoxy3G03276' => 'aox', 'Aqoxy6G02638' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3VS4JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.52N2TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JCW6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68S12V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JEV76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K4C9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CNIN65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP5746' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E7ZXJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7SZPJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG4MQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP8974' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KUZ14P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6SVEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH20X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB3V0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QDS2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QM0EZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIN6AN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULUP0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VJ3SQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4KKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE2V2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB1IZC' => 'arhy', 'AT3G01280' => 'ath', 'AT3G49920' => 'ath', 'AT5G15090' => 'ath', 'AT5G37610' => 'ath', 'AT5G57490' => 'ath', 'AT5G67500' => 'ath', 'ATR0580G110' => 'atr', 'ATR0697G113' => 'atr', 'ATR0697G282' => 'atr', 'ATR1120G159' => 'atr', 'ATR1153G051' => 'atr', 'Atru.chr11.1845' => 'acertr', 'Atru.chr3.142' => 'acertr', 'Atru.chr5.2352' => 'acertr', 'Atru.chr5.2353' => 'acertr', 'Atru.chr5.2355' => 'acertr', 'Atru.chr7.671' => 'acertr', 'Atru.chr8.1907' => 'acertr', 'Atru.chr9.2316' => 'acertr', 'AUR62004001' => 'cqu', 'AUR62005728' => 'cqu', 'AUR62027002' => 'cqu', 'AUR62028832' => 'cqu', 'AUR62030842' => 'cqu', 'AUR62031639' => 'cqu', 'AUR62033211' => 'cqu', 'AUR62038869' => 'cqu', 'AUR62040245' => 'cqu', 'AUR62040313' => 'cqu', 'BcaB01g04452' => 'bca', 'BcaB01g04454' => 'bca', 'BcaB01g04455' => 'bca', 'BcaB02g09917' => 'bca', 'BcaB04g20048' => 'bca', 'BcaB04g21422' => 'bca', 'BcaB05g22347' => 'bca', 'BcaB06g25648' => 'bca', 'BcaB06g26819' => 'bca', 'BcaB08g36929' => 'bca', 'BcaC01g04516' => 'bca', 'BcaC01g06485' => 'bca', 'BcaC02g11968' => 'bca', 'BcaC03g13434' => 'bca', 'BcaC03g18367' => 'bca', 'BcaC04g18989' => 'bca', 'BcaC04g19963' => 'bca', 'BcaC04g20421' => 'bca', 'BcaC04g21850' => 'bca', 'BcaC04g23231' => 'bca', 'BcaC05g30400' => 'bca', 'BcaC05g30477' => 'bca', 'BcaC08g47557' => 'bca', 'BcaC09g47644' => 'bca', 'BcaNung03334' => 'bca', 'BcaNung06406' => 'bca', 'BcaNung07192' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00260' => 'bna', 'BolC1t05948H' => 'bol', 'BolC2t06679H' => 'bol', 'BolC2t10916H' => 'bol', 'BolC2t12506H' => 'bol', 'BolC3t16233H' => 'bol', 'BolC3t18220H' => 'bol', 'BolC4t22549H' => 'bol', 'BolC4t23203H' => 'bol', 'BolC5t34356H' => 'bol', 'BolC5t35130H' => 'bol', 'BolC5t35136H' => 'bol', 'BolC6t40398H' => 'bol', 'BolC7t45079H' => 'bol', 'BolC9t53981H' => 'bol', 'BolC9t57255H' => 'bol', 'BolC9t57784H' => 'bol', 'BolC9t59047H' => 'bol', 'BraA01t03421Z' => 'bra', 'BraA01t04652Z' => 'bra', 'BraA02t05259Z' => 'bra', 'BraA02t09339Z' => 'bra', 'BraA03t12428Z' => 'bra', 'BraA03t13873Z' => 'bra', 'BraA05t23186Z' => 'bra', 'BraA06t26222Z' => 'bra', 'BraA09t36582Z' => 'bra', 'BraA09t38550Z' => 'bra', 'BraA10t43570Z' => 'bra', 'BraA10t44439Z' => 'bra', 'C02p07480' => 'bna', 'C02p64420' => 'bna', 'C03p14960' => 'bna', 'C03p39690' => 'bna', 'C05p56920' => 'bna', 'C06p51140' => 'bna', 'C06p53840' => 'bna', 'C07p45580' => 'bna', 'C09p10880' => 'bna', 'C09p26660' => 'bna', 'C09p43700' => 'bna', 'C09p49330' => 'bna', 'C09p62050' => 'bna', 'C09p62090' => 'bna', 'C09p75290' => 'bna', 'CAN.G1075.30' => 'can', 'CAN.G1128.3' => 'can', 'CAN.G1156.29' => 'can', 'CAN.G1711.4' => 'can', 'CAN.G176.7' => 'can', 'CAN.G206.109' => 'can', 'CAN.G206.112' => 'can', 'CAN.G206.117' => 'can', 'CAN.G206.118' => 'can', 'CAN.G278.13' => 'can', 'CAN.G356.5' => 'can', 'CAN.G38.28' => 'can', 'CAN.G473.30' => 'can', 'CAN.G473.31' => 'can', 'CAN.G555.1' => 'can', 'CANSAT01G2770' => 'cansat', 'CANSAT25G1686' => 'cansat', 'CANSAT64G0808' => 'cansat', 'CANSAT64G2335' => 'cansat', 'CANSAT64G2894' => 'cansat', 'CANSAT80G2486' => 'cansat', 'CARHR075750' => 'chi', 'CARHR198230' => 'chi', 'CARHR271270' => 'chi', 'CARHR280090' => 'chi', 'Carub.0003s0087' => 'cru', 'Carub.0005s1628' => 'cru', 'Carub.0006s1326' => 'cru', 'Carub.0008s1799' => 'cru', 'Carub.0008s2697' => 'cru', 'Ca_04101_v3' => 'car', 'Ca_04263_v3' => 'car', 'Ca_13208_v3' => 'car', 'Ca_13222_v3' => 'car', 'Ca_21217_v3' => 'car', 'Ca_21847_v3' => 'car', 'Ca_22857_v3' => 'car', 'Ca_24698_v3' => 'car', 'CBR_g27895' => 'cbr', 'Cc04_g15520' => 'ccan', 'Cc06_g13320' => 'ccan', 'Cc07_g03010' => 'ccan', 'Cc07_g07040' => 'ccan', 'Cc10_g05760' => 'ccan', 'Cc11_g13460' => 'ccan', 'Cc11_g13470' => 'ccan', 'CDE02G2981' => 'cde', 'CDE02G3120' => 'cde', 'CDE04G0167' => 'cde', 'CDE04G2139' => 'cde', 'CDE07G0484' => 'cde', 'Cfa004126' => 'cfa', 'Cfa007513' => 'cfa', 'Cfa009030' => 'cfa', 'Cfa013514' => 'cfa', 'Cfa013782' => 'cfa', 'Cfa018989' => 'cfa', 'Ciclev10009163m.g' => 'ccl', 'Ciclev10012445m.g' => 'ccl', 'Ciclev10021785m.g' => 'ccl', 'Ciclev10026251m.g' => 'ccl', 'Ciclev10032366m.g' => 'ccl', 'CiPaw.01G005100' => 'cil', 'CiPaw.03G029900' => 'cil', 'CiPaw.04G019800' => 'cil', 'CiPaw.05G139500' => 'cil', 'CiPaw.07G175200' => 'cil', 'CiPaw.07G191700' => 'cil', 'CiPaw.08G036900' => 'cil', 'CiPaw.11G038300' => 'cil', 'ClCG02G012660' => 'cla', 'ClCG06G013290' => 'cla', 'ClCG08G008950' => 'cla', 'ClCG10G014810' => 'cla', 'COL.COLO4_07927' => 'col', 'COL.COLO4_11568' => 'col', 'COL.COLO4_25174' => 'col', 'COL.COLO4_28510' => 'col', 'COL.COLO4_32515' => 'col', 'Cpa.g.c32999' => 'cpa', 'Cpa.g.sc17.212' => 'cpa', 'Cpa.g.sc5.272' => 'cpa', 'Cpa.g.sc6.23' => 'cpa', 'Cpa.g.sc95.58' => 'cpa', 'Cre01.g013700' => 'cre', 'Cre05.g241950' => 'cre', 'CsaV3_1G031550' => 'csa', 'CsaV3_2G016770' => 'csa', 'CsaV3_3G041720' => 'csa', 'CsaV3_4G035040' => 'csa', 'CsaV3_6G036180' => 'csa', 'CSS0011865' => 'camsi', 'CSS0016359' => 'camsi', 'CSS0020694' => 'camsi', 'CSS0023248' => 'camsi', 'CSS0027285' => 'camsi', 'CSS0027360' => 'camsi', 'CSS0030723' => 'camsi', 'CSS0033676' => 'camsi', 'CSS0035705' => 'camsi', 'CSS0037863' => 'camsi', 'CSS0038694' => 'camsi', 'CSS0043349' => 'camsi', 'CSS0043792' => 'camsi', 'DCAR_000295' => 'dca', 'DCAR_007133' => 'dca', 'DCAR_011162' => 'dca', 'DCAR_020121' => 'dca', 'DCAR_021669' => 'dca', 'DCAR_021671' => 'dca', 'DCAR_025366' => 'dca', 'DCAR_025797' => 'dca', 'DCAR_027387' => 'dca', 'DCAR_028673' => 'dca', 'DCAR_031049' => 'dca', 'Dinv04054' => 'din', 'Dinv06514' => 'din', 'Dinv19917' => 'din', 'Dinv24957' => 'din', 'Dinv26924' => 'din', 'Dinv34205' => 'din', 'Dinv38667' => 'din', 'Dinv41254' => 'din', 'Duzib041G0640' => 'dzi', 'Duzib052G1235' => 'dzi', 'Duzib132G1002' => 'dzi', 'Duzib132G1165' => 'dzi', 'Duzib147G0029' => 'dzi', 'Duzib147G1242' => 'dzi', 'Duzib150G1048' => 'dzi', 'Duzib168G0237' => 'dzi', 'Duzib170G1146' => 'dzi', 'Duzib187G0298' => 'dzi', 'Duzib187G1487' => 'dzi', 'Duzib205G0126' => 'dzi', 'Duzib248G1640' => 'dzi', 'Duzib251G0096' => 'dzi', 'Duzib264G0017' => 'dzi', 'Duzib268G1439' => 'dzi', 'ECA232G3764' => 'eca', 'ECA232G3784' => 'eca', 'ECA234G3570' => 'eca', 'ECA236G0254' => 'eca', 'ECA238G2029' => 'eca', 'ECA246G0294' => 'eca', 'ECA246G5204' => 'eca', 'EL10Ac2g02937' => 'bvu', 'EL10Ac6g13155' => 'bvu', 'EL10Ac6g15624' => 'bvu', 'EL10Ac8g18278' => 'bvu', 'EL10Ac9g22201' => 'bvu', 'Eucgr.B00430' => 'egr', 'Eucgr.C00165' => 'egr', 'Eucgr.F02253' => 'egr', 'Eucgr.G02544' => 'egr', 'Eucgr.I00711' => 'egr', 'Eucgr.I02018' => 'egr', 'Eucgr.J02133' => 'egr', 'FAN02G1742' => 'fan', 'FAN04G2177' => 'fan', 'FAN05G3168' => 'fan', 'FAN06G3911' => 'fan', 'FAN07G1401' => 'fan', 'FAN08G1275' => 'fan', 'FAN09G1983' => 'fan', 'FAN12G0370' => 'fan', 'FAN12G1868' => 'fan', 'FAN13G1852' => 'fan', 'FAN14G5145' => 'fan', 'FAN15G1743' => 'fan', 'FAN17G1490' => 'fan', 'FAN18G0988' => 'fan', 'FAN18G3794' => 'fan', 'FAN19G1619' => 'fan', 'FAN20G2718' => 'fan', 'FAN22G0731' => 'fan', 'FAN23G1039' => 'fan', 'FAN23G1727' => 'fan', 'FAN23G2553' => 'fan', 'FAN24G1659' => 'fan', 'FAN26G1359' => 'fan', 'FAN27G3178' => 'fan', 'FAN28G1689' => 'fan', 'FvH4_1g17630' => 'fve', 'FvH4_2g33140' => 'fve', 'FvH4_4g09860' => 'fve', 'FvH4_4g16150' => 'fve', 'FvH4_4g31911' => 'fve', 'FvH4_5g15480' => 'fve', 'FvH4_5g31810' => 'fve', 'FvH4_6g49250' => 'fve', 'FvH4_7g03400' => 'fve', 'Glyma.01G193700' => 'gma', 'Glyma.04G174300' => 'gma', 'Glyma.05G029700' => 'gma', 'Glyma.06G190400' => 'gma', 'Glyma.08G296700' => 'gma', 'Glyma.09G240600' => 'gma', 'Glyma.11G048200' => 'gma', 'Glyma.13G064900' => 'gma', 'Glyma.13G096000' => 'gma', 'Glyma.14G088800' => 'gma', 'Glyma.17G064100' => 'gma', 'Glyma.17G097100' => 'gma', 'Glyma.17G235700' => 'gma', 'Glyma.18G125500' => 'gma', 'Glyma.18G255700' => 'gma', 'Glyma.19G020100' => 'gma', 'Gohir.A03G093060' => 'ghi', 'Gohir.A03G098300' => 'ghi', 'Gohir.A05G209800' => 'ghi', 'Gohir.A05G304900' => 'ghi', 'Gohir.A07G215500' => 'ghi', 'Gohir.A08G085200' => 'ghi', 'Gohir.A09G021500' => 'ghi', 'Gohir.A09G067400' => 'ghi', 'Gohir.A11G215300' => 'ghi', 'Gohir.A11G288441' => 'ghi', 'Gohir.A12G076500' => 'ghi', 'Gohir.A12G166600' => 'ghi', 'Gohir.A12G175280' => 'ghi', 'Gohir.A13G046700' => 'ghi', 'Gohir.A13G046750' => 'ghi', 'Gohir.D02G100550' => 'ghi', 'Gohir.D02G114800' => 'ghi', 'Gohir.D02G122050' => 'ghi', 'Gohir.D02G166050' => 'ghi', 'Gohir.D05G213100' => 'ghi', 'Gohir.D05G304000' => 'ghi', 'Gohir.D07G222500' => 'ghi', 'Gohir.D08G094500' => 'ghi', 'Gohir.D09G020900' => 'ghi', 'Gohir.D09G067100' => 'ghi', 'Gohir.D11G208000' => 'ghi', 'Gohir.D11G222200' => 'ghi', 'Gohir.D11G226320' => 'ghi', 'Gohir.D12G074800' => 'ghi', 'Gohir.D12G170100' => 'ghi', 'Gohir.D12G178276' => 'ghi', 'Gohir.D13G042700' => 'ghi', 'Gorai.001G256800' => 'gra', 'Gorai.004G100400' => 'gra', 'Gorai.005G114000' => 'gra', 'Gorai.005G132100' => 'gra', 'Gorai.005G139100' => 'gra', 'Gorai.005G186100' => 'gra', 'Gorai.006G024700' => 'gra', 'Gorai.006G081500' => 'gra', 'Gorai.007G223000' => 'gra', 'Gorai.007G244300' => 'gra', 'Gorai.008G082900' => 'gra', 'Gorai.008G182700' => 'gra', 'Gorai.008G190600' => 'gra', 'Gorai.009G219700' => 'gra', 'Gorai.009G323300' => 'gra', 'Gorai.013G050600' => 'gra', 'GSVIVG01000115001' => 'vvi', 'GSVIVG01000122001' => 'vvi', 'GSVIVG01008059001' => 'vvi', 'GSVIVG01009346001' => 'vvi', 'GSVIVG01011346001' => 'vvi', 'GSVIVG01020070001' => 'vvi', 'GSVIVG01029194001' => 'vvi', 'HanXRQChr02g0056441' => 'han', 'HanXRQChr03g0068621' => 'han', 'HanXRQChr03g0069551' => 'han', 'HanXRQChr03g0076051' => 'han', 'HanXRQChr04g0097821' => 'han', 'HanXRQChr05g0137251' => 'han', 'HanXRQChr05g0144681' => 'han', 'HanXRQChr07g0191971' => 'han', 'HanXRQChr09g0265511' => 'han', 'HanXRQChr12g0357421' => 'han', 'HanXRQChr12g0373081' => 'han', 'HanXRQChr14g0449351' => 'han', 'HanXRQChr15g0472661' => 'han', 'HanXRQChr15g0478121' => 'han', 'HanXRQChr16g0513111' => 'han', 'HanXRQChr16g0513121' => 'han', 'Haze_07378' => 'cav', 'Haze_12059' => 'cav', 'Haze_14582' => 'cav', 'Haze_15289' => 'cav', 'Haze_22110' => 'cav', 'Haze_22441' => 'cav', 'Hma1.2p1_0002F.1_g003220' => 'hma', 'Hma1.2p1_0730F.1_g209740' => 'hma', 'Hma1.2p1_0808F.1_g221570' => 'hma', 'Hma1.2p1_2478F.1_g322930' => 'hma', 'HPP92_007668' => 'vpl', 'HPP92_008489' => 'vpl', 'HPP92_009491' => 'vpl', 'HPP92_009542' => 'vpl', 'HPP92_027986' => 'vpl', 'Hund00432' => 'sun', 'Hund09025' => 'sun', 'Hund13238' => 'sun', 'Hund13949' => 'sun', 'Hund14752' => 'sun', 'Hund15635' => 'sun', 'Hund16397' => 'sun', 'Hund25268' => 'sun', 'Lalb_Chr02g0159511' => 'lal', 'Lalb_Chr05g0225891' => 'lal', 'Lalb_Chr06g0175481' => 'lal', 'Lalb_Chr09g0335291' => 'lal', 'Lalb_Chr13g0300271' => 'lal', 'Lalb_Chr21g0318981' => 'lal', 'Lalb_Chr22g0355611' => 'lal', 'Lj1g0025216' => 'lja', 'Lj2g0020346' => 'lja', 'Lj2g0025788' => 'lja', 'Lj3A193T20' => 'lonja', 'Lj3C1042T7' => 'lonja', 'Lj3P189T34' => 'lonja', 'Lj4A162T71' => 'lonja', 'Lj4g0008003' => 'lja', 'Lj4g0019132' => 'lja', 'Lj5g0023114' => 'lja', 'Lj5P115T18' => 'lonja', 'Lj6A74T31' => 'lonja', 'Lj6A793T96' => 'lonja', 'Lj6A8G17' => 'lonja', 'Lj6g0004824' => 'lja', 'Lj7C401T11' => 'lonja', 'Lj7C96T2' => 'lonja', 'Lj9A686T20' => 'lonja', 'Lju41A27T64' => 'lonja', 'Lsat_1_v5_gn_2_83280' => 'lsa', 'Lsat_1_v5_gn_2_83381' => 'lsa', 'Lsat_1_v5_gn_2_88561' => 'lsa', 'Lsat_1_v5_gn_3_51460' => 'lsa', 'Lsat_1_v5_gn_4_160741' => 'lsa', 'Lsat_1_v5_gn_4_176921' => 'lsa', 'Lsat_1_v5_gn_4_9240' => 'lsa', 'Lsat_1_v5_gn_6_9361' => 'lsa', 'Lsat_1_v5_gn_7_47300' => 'lsa', 'Lsat_1_v5_gn_7_89841' => 'lsa', 'Lsat_1_v5_gn_8_67060' => 'lsa', 'Manes.01G189900' => 'mes', 'Manes.05G097001' => 'mes', 'Manes.05G181800' => 'mes', 'Manes.14G074800' => 'mes', 'Manes.15G179508' => 'mes', 'Manes.17G021451' => 'mes', 'Manes.18G046300' => 'mes', 'Mapoly0001s0240' => 'mpo', 'Mapoly0045s0018' => 'mpo', 'MBI04_g35159_MAGBIO' => 'mbi', 'MBI11_g14653_MAGBIO' => 'mbi', 'MBI11_g15186_MAGBIO' => 'mbi', 'MBI11_g45853_MAGBIO' => 'mbi', 'MBI14_g17361_MAGBIO' => 'mbi', 'MBI16_g26540_MAGBIO' => 'mbi', 'MCO01G034' => 'mco', 'MCO02G071' => 'mco', 'MD00G1064400' => 'mdo', 'MD02G1185100' => 'mdo', 'MD05G1100000' => 'mdo', 'MD05G1100300' => 'mdo', 'MD06G1188300' => 'mdo', 'MD09G1047200' => 'mdo', 'MD13G1078700' => 'mdo', 'MD14G1194800' => 'mdo', 'MD15G1070400' => 'mdo', 'MD15G1296700' => 'mdo', 'MD16G1078300' => 'mdo', 'MD17G1047400' => 'mdo', 'Medtr1g018205' => 'mtr', 'Medtr4g107840' => 'mtr', 'Medtr4g128300' => 'mtr', 'Medtr5g015580' => 'mtr', 'Medtr6g011390' => 'mtr', 'Medtr7g009330' => 'mtr', 'Medtr8g469150' => 'mtr', 'MELO3C000215.2' => 'cme', 'MELO3C009893.2' => 'cme', 'MELO3C016818.2' => 'cme', 'MELO3C017471.2' => 'cme', 'MELO3C019776.2' => 'cme', 'MELO3C020905.2' => 'cme', 'MELO3C027903.2' => 'cme', 'MELO3C031373.2' => 'cme', 'Migut.E00113' => 'egut', 'Migut.H00352' => 'egut', 'Migut.H00889' => 'egut', 'Migut.I00029' => 'egut', 'Migut.K00247' => 'egut', 'Migut.K01332' => 'egut', 'Migut.L00213' => 'egut', 'Migut.L01341' => 'egut', 'MSTRG.10734' => 'ama', 'MSTRG.23675' => 'ama', 'MSTRG.25039' => 'ama', 'MSTRG.26225' => 'ama', 'MSTRG.3215' => 'ama', 'MSTRG.3315' => 'ama', 'MSTRG.673' => 'ama', 'MSTRG.7823' => 'ama', 'Nitab4.5_0000002g0440' => 'nta', 'Nitab4.5_0000141g0340' => 'nta', 'Nitab4.5_0000274g0030' => 'nta', 'Nitab4.5_0000651g0260' => 'nta', 'Nitab4.5_0000785g0240' => 'nta', 'Nitab4.5_0000879g0110' => 'nta', 'Nitab4.5_0000957g0200' => 'nta', 'Nitab4.5_0001063g0070' => 'nta', 'Nitab4.5_0001417g0060' => 'nta', 'Nitab4.5_0002699g0060' => 'nta', 'Nitab4.5_0002752g0030' => 'nta', 'Nitab4.5_0004605g0050' => 'nta', 'Nitab4.5_0005670g0030' => 'nta', 'Nitab4.5_0006813g0030' => 'nta', 'Nitab4.5_0007650g0050' => 'nta', 'Nitab4.5_0014130g0010' => 'nta', 'Nitab4.5_0015993g0020' => 'nta', 'Nn1g04568' => 'nnu', 'Nn2g12709' => 'nnu', 'Nn4g23050' => 'nnu', 'Nn5g30579' => 'nnu', 'Oeu013617.1' => 'oeu', 'Oeu027768.1' => 'oeu', 'Oeu028693.1' => 'oeu', 'Oeu031521.1' => 'oeu', 'Oeu040123.1' => 'oeu', 'Oeu042155.1' => 'oeu', 'Oeu060917.1' => 'oeu', 'Os01g0588200' => 'osa', 'Os01g0715500' => 'osa', 'Os03g0137500' => 'osa', 'Os03g0202200' => 'osa', 'Os05g0536200' => 'osa', 'Os09g0361400' => 'osa', 'Peaxi162Scf00009g00319' => 'pax', 'Peaxi162Scf00009g00329' => 'pax', 'Peaxi162Scf00009g00340' => 'pax', 'Peaxi162Scf00026g02311' => 'pax', 'Peaxi162Scf00059g00318' => 'pax', 'Peaxi162Scf00060g02811' => 'pax', 'Peaxi162Scf00118g01923' => 'pax', 'Peaxi162Scf00129g00515' => 'pax', 'Peaxi162Scf00209g00324' => 'pax', 'Peaxi162Scf00300g00837' => 'pax', 'Peaxi162Scf00451g00928' => 'pax', 'Peaxi162Scf00548g00650' => 'pax', 'Peaxi162Scf00610g00347' => 'pax', 'Peaxi162Scf00713g00044' => 'pax', 'PGR004G1377' => 'pgr', 'PGR004G2719' => 'pgr', 'PGR031G0885' => 'pgr', 'PGR083G0440' => 'pgr', 'PGR102G3230' => 'pgr', 'PGR119G0549' => 'pgr', 'PGR142G0233' => 'pgr', 'PGSC0003DMG400000864' => 'stu', 'PGSC0003DMG400002066' => 'stu', 'PGSC0003DMG400006896' => 'stu', 'PGSC0003DMG400009093' => 'stu', 'PGSC0003DMG400021448' => 'stu', 'PGSC0003DMG400025346' => 'stu', 'Phvul.001G027200' => 'pvu', 'Phvul.002G011300' => 'pvu', 'Phvul.003G069300' => 'pvu', 'Phvul.003G146600' => 'pvu', 'Phvul.003G192600' => 'pvu', 'Phvul.008G043800' => 'pvu', 'Phvul.009G190000' => 'pvu', 'Potri.001G294000' => 'ptr', 'Potri.001G294100' => 'ptr', 'Potri.005G146800' => 'ptr', 'Potri.006G169400' => 'ptr', 'Potri.007G055800' => 'ptr', 'Potri.008G194900' => 'ptr', 'Potri.009G088466' => 'ptr', 'Potri.010G033500' => 'ptr', 'Potri.012G070300' => 'ptr', 'Potri.014G016300' => 'ptr', 'Potri.017G078200' => 'ptr', 'Potri.018G093900' => 'ptr', 'Pp3c10_18660' => 'ppa', 'Pp3c15_9100' => 'ppa', 'Pp3c22_12950' => 'ppa', 'Pp3c9_21110' => 'ppa', 'PRCOL_00000930' => 'pco', 'Prupe.1G086700' => 'ppe', 'Prupe.1G268200' => 'ppe', 'Prupe.1G423200' => 'ppe', 'Prupe.3G271800' => 'ppe', 'Prupe.5G186500' => 'ppe', 'Prupe.6G221700' => 'ppe', 'Prupe.8G144700' => 'ppe', 'Psat0s410g0200' => 'psa', 'Psat0s5549g0040' => 'psa', 'Psat0s563g0080' => 'psa', 'Psat0s9512g0040' => 'psa', 'Psat1g016160' => 'psa', 'Psat1g016200' => 'psa', 'Psat1g016280' => 'psa', 'Psat1g077520' => 'psa', 'Psat1g119920' => 'psa', 'Psat2g081200' => 'psa', 'Psat2g171360' => 'psa', 'Psat3g195320' => 'psa', 'Psat4g008720' => 'psa', 'Psat4g011720' => 'psa', 'Psat4g027560' => 'psa', 'Psat4g053560' => 'psa', 'Psat4g132360' => 'psa', 'Psat6g016200' => 'psa', 'Psat6g068240' => 'psa', 'Psat7g023480' => 'psa', 'PSO013G0404' => 'pso', 'PSO017G0776' => 'pso', 'PSO017G3893' => 'pso', 'PSO135G0454' => 'pso', 'PSO170G6126' => 'pso', 'PSO210G6207' => 'pso', 'PSO339G2508' => 'pso', 'PSO384G1329' => 'pso', 'PSO384G4905' => 'pso', 'PSO478G3459' => 'pso', 'PSO478G3956' => 'pso', 'PSO478G4431' => 'pso', 'PSO541G1550' => 'pso', 'PSO591G0376' => 'pso', 'PSO675G0960' => 'pso', 'PSO713G0003' => 'pso', 'PSO729G0092' => 'pso', 'PSO782G0459' => 'pso', 'PSO782G5169' => 'pso', 'PSO832G0499' => 'pso', 'PSO832G1189' => 'pso', 'QL02p080619' => 'qlo', 'QL02p097597' => 'qlo', 'QL03p006791' => 'qlo', 'QL03p065609' => 'qlo', 'QL10p015607' => 'qlo', 'QL12p038045' => 'qlo', 'RcHm_v2.0_Chr2g0107951' => 'rch', 'RcHm_v2.0_Chr2g0169111' => 'rch', 'RcHm_v2.0_Chr4g0402631' => 'rch', 'RcHm_v2.0_Chr4g0440571' => 'rch', 'RcHm_v2.0_Chr6g0253791' => 'rch', 'RcHm_v2.0_Chr6g0309531' => 'rch', 'RcHm_v2.0_Chr7g0180611' => 'rch', 'Rhsim03G0111200' => 'rsi', 'Rhsim03G0264100' => 'rsi', 'Rhsim08G0066300' => 'rsi', 'Rhsim08G0094000' => 'rsi', 'Rhsim08G0159600' => 'rsi', 'Rhsim12G0057500' => 'rsi', 'RhsimUnG0055400' => 'rsi', 'Sabra05G0117200' => 'sbr', 'Sabra05G0119300' => 'sbr', 'Sabra06G0130500' => 'sbr', 'Sabra07G0047900' => 'sbr', 'Sabra08G0148100' => 'sbr', 'Sabra09G0068500' => 'sbr', 'Sabra10G0030900' => 'sbr', 'Sabra12G0050100' => 'sbr', 'Sabra14G0010100' => 'sbr', 'Sabra16G0183600' => 'sbr', 'Sabra16G0183700' => 'sbr', 'Sabra16G0183900' => 'sbr', 'Sabra17G0062500' => 'sbr', 'Sabra17G0069500' => 'sbr', 'SalBow1G0195' => 'sbo', 'SalBow1G5372' => 'sbo', 'SalBow2G0272' => 'sbo', 'SalBow2G2710' => 'sbo', 'SalBow3G0215' => 'sbo', 'SalBow4G0245' => 'sbo', 'SalBow5G1797' => 'sbo', 'SalBow5G3478' => 'sbo', 'SalBow7G3092' => 'sbo', 'SalBow8G4534' => 'sbo', 'Sc03g0002370' => 'sci', 'Sc07g0000560' => 'sci', 'Sc08g0004490' => 'sci', 'Sc08g0005550' => 'sci', 'Sc11g0001710' => 'sci', 'Sc14g0006020' => 'sci', 'Sc14g0008370' => 'sci', 'Sed0002504' => 'sed', 'Sed0010310' => 'sed', 'Sed0012213' => 'sed', 'Sed0015331' => 'sed', 'Sed0023557' => 'sed', 'Sed0025594' => 'sed', 'SEGI_12625' => 'sgi', 'SEGI_20682' => 'sgi', 'SEGI_20708' => 'sgi', 'SEGI_29741' => 'sgi', 'SEGI_37330' => 'sgi', 'SEGI_39106' => 'sgi', 'SGA_v2.0_scaffold135G34777' => 'sas', 'SGA_v2.0_scaffold17G07904' => 'sas', 'SGA_v2.0_scaffold205G41759' => 'sas', 'SGA_v2.0_scaffold302G47861' => 'sas', 'SGA_v2.0_scaffold72G24075' => 'sas', 'SHI06854' => 'shi', 'SMO146G0170' => 'smo', 'SMO173G0089' => 'smo', 'SMO238G0030' => 'smo', 'SMO271G0145' => 'smo', 'SMO353G0066' => 'smo', 'Solyc01g010760.3' => 'sly', 'Solyc02g067460.3' => 'sly', 'Solyc02g092440.3' => 'sly', 'Solyc03g044010.4' => 'sly', 'Solyc03g058920.3' => 'sly', 'Solyc03g113210.3' => 'sly', 'Solyc07g008350.3' => 'sly', 'Sopen00g012350' => 'spe', 'Sopen01g006410' => 'spe', 'Sopen02g016610' => 'spe', 'Sopen02g036990' => 'spe', 'Sopen03g007810' => 'spe', 'Sopen03g012820' => 'spe', 'Sopen03g032270' => 'spe', 'Sopen07g004240' => 'spe', 'Sp2g29150' => 'spa', 'Sp3g00820' => 'spa', 'Sp5g12190' => 'spa', 'Sp6g19200' => 'spa', 'Sp6g28980' => 'spa', 'TAR305G0001' => 'tar', 'TAR374G0255' => 'tar', 'TAR376G0206' => 'tar', 'TAR381G1114' => 'tar', 'TAR383G0927' => 'tar', 'TAR568G0001' => 'tar', 'TAR622G0598' => 'tar', 'TAR626G0351' => 'tar', 'TAR628G1285' => 'tar', 'TAR636G0677' => 'tar', 'TAR636G0775' => 'tar', 'THA.LOC104802417' => 'tha', 'THA.LOC104811792' => 'tha', 'THA.LOC104813525' => 'tha', 'THA.LOC104817795' => 'tha', 'THA.LOC104819265' => 'tha', 'THA.LOC104821046' => 'tha', 'THA.LOC104821222' => 'tha', 'THA.LOC104821548' => 'tha', 'THA.LOC104822210' => 'tha', 'THA.LOC104822371' => 'tha', 'Thecc.01G072000' => 'tca', 'Thecc.02G116900' => 'tca', 'Thecc.02G354700' => 'tca', 'Thecc.03G079300' => 'tca', 'Thecc.04G075100' => 'tca', 'Thecc.08G089200' => 'tca', 'Thecc.09G172100' => 'tca', 'Thhalv10004631m.g' => 'esa', 'Thhalv10010622m.g' => 'esa', 'Thhalv10014354m.g' => 'esa', 'Thhalv10014362m.g' => 'esa', 'Thhalv10021076m.g' => 'esa', 'TPR.G16086' => 'tpr', 'TPR.G33253' => 'tpr', 'TPR.G34848' => 'tpr', 'TPR.G3769' => 'tpr', 'TPR.G38448' => 'tpr', 'TPR.G4275' => 'tpr', 'TPR.G4350' => 'tpr', 'TPR.G5417' => 'tpr', 'TWI09G0607' => 'twi', 'TWI12G0337' => 'twi', 'TWI14G0871' => 'twi', 'TWI32G0605' => 'twi', 'TWI32G1349' => 'twi', 'TWI34G0247' => 'twi', 'TWI53G0469' => 'twi', 'TWI56G0529' => 'twi', 'TWI59G0172' => 'twi', 'TWI60G0585' => 'twi', 'TWI73G0777' => 'twi', 'TWI75G0404' => 'twi', 'TWI81G0049' => 'twi', 'unitig_46.g18430' => 'ugi', 'unitig_52.g17613' => 'ugi', 'unitig_699.g19921' => 'ugi', 'unitig_746.g26580' => 'ugi', 'unitig_747.g21168' => 'ugi', 'vmacro01229' => 'vma', 'vmacro05407' => 'vma', 'vmacro05733' => 'vma', 'vmacro06017' => 'vma', 'vmacro17509' => 'vma', 'vmacro18028' => 'vma', 'vmacro18210' => 'vma', 'VMungo0251G2012' => 'vmu', 'VMungo0647G1278' => 'vmu', 'VMungo1215G0413' => 'vmu', 'VMungo1215G1524' => 'vmu', 'VMungo1215G3164' => 'vmu', 'VMungo1309G1749' => 'vmu', 'VMungo1383G3646' => 'vmu', 'Zm00001eb003070' => 'zma', 'Zm00001eb007730' => 'zma', 'Zm00001eb098580' => 'zma', 'Zm00001eb154940' => 'zma', 'Zm00001eb160640' => 'zma', 'Zm00001eb253170' => 'zma', 'Zm00001eb294130' => 'zma', 'Zm00001eb310830' => 'zma', 'Zm00001eb356450' => 'zma', 'Zm00001eb357390' => 'zma', 'Zm00001eb400750' => 'zma', 'Zm00001eb402750' => 'zma' ) $gf_id = 'HOM05D000635' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000635' ) $data_identifier = 'HOM05D000635' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 17, 'bra' => (int) 12, 'can' => (int) 15, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 11, 'din' => (int) 8, 'dzi' => (int) 16, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 8, 'lal' => (int) 7, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 20, 'pso' => (int) 21, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 10, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402750' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1